Publications

Feng L, Loi JX, Séneca J, Pjevac P, Adnan FH, Ngoh GC et al. Nitrifying Communities in Biological Nitrogen Removal Processes at Tropical Municipal Wastewater Treatment Plants. Microbes and environments. 2025 Sept 10;40(3):ME25036. doi: 10.1264/jsme2.ME25036

Crudo F, Petri P, Pacchione M, Dall'Asta C, Birse N, Berry D et al. Alternaria mycotoxins and gut microbiota: antimicrobial properties and bacteria-dependent modulation of mycotoxin immunotoxicity. Toxicology Letters. 2025 Sept;411(Supplement: S). doi: 10.1016/j.toxlet.2025.07.160

Chen SC, Li XM, Battisti N, Guan G, Montoya MA, Osvatic J et al. Microbial iron oxide respiration coupled to sulfide oxidation. Nature. 2025 Aug 27;646(8086):925-933. doi: 10.1038/s41586-025-09467-0

Tocino-Márquez I, Zehl M, Séneca Cardoso Da Silva J, Pjevac P, Felkl M, Becker CFW et al. The bacterial community of the freshwater bryozoan Cristatella Mucedo and its secondary metabolites production potential. Scientific Reports. 2025 Aug 26;15(1):31456. doi: 10.1038/s41598-025-17084-0

Kondrotaite Z, Petersen J, Singleton C, Peces M, Petriglieri F, Jensen TBN et al. Ecophysiology and niche differentiation of three genera of polyphosphate-accumulating bacteria in a full-scale wastewater treatment plant. mSystems. 2025 Aug 15;10(9):1-18. doi: 10.1128/msystems.00322-25

Rasoulimehrabani H, Khadem S, Hodžić A, Philipp M, Gallo R, Nikolov G et al. Evaluating the prebiotic activity of arabinogalactan on the human gut microbiota using 16S rRNA gene sequencing and Raman-activated cell sorting. Microbiome Research Reports. 2025 Aug 14;4(3):30. doi: 10.20517/mrr.2025.29

EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Wilkins L et al. The chromosomal genome sequence of the mollusc, Ctena decussata (O.G.Costa, 1829) and its bacterial endosymbiont Candidatus Thiodiazotropha sp. CDECU1 (Chromatiales). Wellcome open research. 2025 Aug 11;10:435. doi: 10.12688/wellcomeopenres.24738.1

Bale NJ, Fujimura H, Pjevac P, Koenen M, Ikeda H, Itagaki S et al. Unusual Plastoquinones in Non-Phototrophic Nitrifying Bacteria. Environmental Microbiology Reports. 2025 Aug 5;17(4):e70174. doi: 10.1111/1758-2229.70174

Breyer E, Stix C, Kilker S, Roller BRK, Panagou F, Doebke C et al. The contribution of pelagic fungi to ocean biomass. Cell. 2025 Jul 24;188(15):3992-4002. doi: 10.1016/j.cell.2025.05.004

Kop LFM, Koch H, Speth D, Lüke C, Spieck E, Jetten MSM et al. Comparative genome analysis reveals broad phylogenetic and functional diversity within the order Nitrospirales. ISME Journal. 2025 Jul 22;19(1):wraf151. doi: 10.1093/ismejo/wraf151

Helmlinger L, Arthofer P, Cyran N, Collingro A, Horn M. The adaptation of chlamydiae to facultative host multicellularity. Current Biology. 2025 Jul 21;35(14):3368-3380.e4. doi: 10.1016/j.cub.2025.06.014

Strachan CR, Bowers CM, Kim BC, Movsesijan T, Neubauer V, Mueller AJ et al. Distinct lactate utilization strategies drive niche differentiation between two co-existing Megasphaera species in the rumen microbiome. ISME Journal. 2025 Jul 14;19(1):1-13. doi: 10.1093/ismejo/wraf147

Rathour R, Ma Y, Xiong J, Wang XW, Petersen J, Zhang X. Hemolymph microbiota and host immunity of crustaceans and mollusks. ISME Journal. 2025 Jun 28;19(1). doi: 10.1093/ismejo/wraf133

Rasoulimehrabani H, Riva A, Inan D, Hodžić A, Hausmann B, Nikolov G et al. Lactulose selectively stimulates members of the gut microbiota, as determined by multi-modal activity-based sorting. Gut microbes. 2025 Jun 27;17(1):2525482. doi: 10.1080/19490976.2025.2525482

Hodzic A, Kunert M, Berry D. Protocol for the visualization of bacteria in the tick gut using whole-mount fluorescence in situ hybridization. STAR Protocols. 2025 Jun 20;6(2):103814. doi: 10.1016/j.xpro.2025.103814

Mayer L, Nikolov G, Kunert M, Horn M, Willemsen A. Mimivirus transcription and translation occur at well-defined locations within amoeba host cells. Journal of Virology. 2025 Jun 13;99(7):e00554-25. doi: 10.1128/jvi.00554-25

Gawish R, Varada R, Deckert F, Hladik A, Steinbichl L, Cimatti L et al. Filamin A editing in myeloid cells reduces intestinal inflammation and protects from colitis. The Journal of Experimental Medicine. 2025 Jun 5;222(9). doi: 10.1084/jem.20240109