Publications
Showing entries 1 - 20 out of 858
2025
Global Water Microbiome Consortium, Zhu, C, Wu, L, Ning, D, Tian, R, Gao, S, Zhang, B, Zhao, J, Zhang, Y, Xiao, N, Wang, Y, Brown, MR, Tu, Q, Ju, F, Wells, GF, Guo, J, He, Z, Nielsen, PH, Wang, A, Zhang, Y, Chen, T, He, Q, Criddle, CS, Wagner, M, Tiedje, JM, Curtis, TP, Wen, X, Yang, Y, Alvarez-Cohen, L, Stahl, DA, Alvarez, PJJ, Rittmann, BE & Zhou, J 2025, 'Global diversity and distribution of antibiotic resistance genes in human wastewater treatment systems', Nature Communications, vol. 16, no. 1, 4006. https://doi.org/10.1038/s41467-025-59019-3
Hodzic, A, Kunert, M & Berry, D 2025, 'Protocol for the visualization of bacteria in the tick gut using whole-mount fluorescence in situ hybridization', STAR Protocols, vol. 6, no. 2, pp. 103814. https://doi.org/10.1016/j.xpro.2025.103814
Gawish, R, Varada, R, Deckert, F, Hladik, A, Steinbichl, L, Cimatti, L, Milanovic, K, Jain, M, Torgasheva, N, Tanzer, A, De Paepe, K, Van de Wiele, T, Hausmann, B, Lang, M, Pechhacker, M, Ibrahim, N, De Vries, I, Brostjan, C, Sixt, M, Gasche, C, Boon, L, Berry, D, Jantsch, MF, Pereira, FC & Vesely, C 2025, 'Filamin A editing in myeloid cells reduces intestinal inflammation and protects from colitis', The Journal of Experimental Medicine, vol. 222, no. 9. https://doi.org/10.1084/jem.20240109
Fejes, R, Séneca, J, Pjevac, P, Lutnik, M, Weisshaar, S, Pilat, N, Steiner, R, Wagner, KH, Woodman, RJ, Bondonno, CP, Hodgson, JM, Berry, D, Wolzt, M & Neubauer, O 2025, 'Increased Nitrate Intake From Beetroot Juice Over 4 Weeks Changes the Composition of the Oral, But Not the Intestinal Microbiome', Molecular Nutrition and Food Research. https://doi.org/10.1002/mnfr.70156
Breyer, E, Stix, C, Kilker, S, Roller, BRK, Panagou, F, Doebke, C, Amano, C, Saavedra, DEM, Coll-García, G, Steger-Mähnert, B, Dachs, J, Berrojalbiz, N, Vila-Costa, M, Sobrino, C, Fuentes-Lema, A, Berthiller, F, Polz, MF & Baltar, F 2025, 'The contribution of pelagic fungi to ocean biomass', Cell. https://doi.org/10.1016/j.cell.2025.05.004
Savchenko, V, Yu, XA, Polz, MF & Böttcher, T 2025, 'Chitinivorax: The New Kid on the Block of Bacterial 2-Alkyl-4(1H)-quinolone Producers', ACS Chemical Biology, vol. 20, no. 4, pp. 960-966. https://doi.org/10.1021/acschembio.5c00046
Hodžić, A, Duscher, GG, Alić, A, Beck, R & Berry, D 2025, 'Peritrophic matrix: an important determinant of vector competence in hematophagous arthropods', Trends in parasitology. https://doi.org/10.1016/j.pt.2025.03.005
Nussbaumer-Pröll, A, Hausmann, B, Weber, M, Pjevac, P, Berry, D & Zeitlinger, M 2025, 'A Pilot Study on the Impact of Cranberry and Ascorbic Acid Supplementation on the Urinary Microbiome of Healthy Women: A Randomized Controlled Trial', Antibiotics, vol. 14, no. 3, 278. https://doi.org/10.3390/antibiotics14030278
Wittlinger, J-P, Castejon Caballero, N, Hausmann, B, Berry, D & Schnorr, SL 2025, 'Shewanella is a putative producer of polyunsaturated fatty acids in the gut soil of the composting earthworm Eisenia fetida', Applied and Environmental Microbiology, vol. 91, no. 2, e0206924. https://doi.org/10.1128/aem.02069-24
Willemsen, A, Manzano-Marín, A & Horn, M 2025, 'Novel high-quality amoeba genomes reveal widespread codon usage mismatch between giant viruses and their hosts', Genome Biology and Evolution, vol. 17, no. 1, evae271. https://doi.org/10.1101/2024.09.23.614596, https://doi.org/10.1093/gbe/evae271
2024
Del Rey, YC, Kitzinger, K, Lund, MB, Schramm, A, Meyer, RL, Wagner, M & Schlafer, S 2024, 'pH-FISH: coupled microscale analysis of microbial identity and acid–base metabolism in complex biofilm samples', Microbiome, vol. 12, no. 1, 266. https://doi.org/10.1186/s40168-024-01977-9
Li, M, Thieringer, PH, Bayer, B, Kellom, M & Santoro, AE 2024, 'Genome sequence of Nitrosopumilus adriaticus CCS1 assembled from an ammonia-oxidizing enrichment culture', Microbiology resource announcements, vol. 13, no. 12, e00692-24. https://doi.org/10.1128/mra.00692-24
Arthofer, P, Panhölzl, F, Delafont, V, Hay, A, Reipert, S, Cyran, N, Wienkoop, S, Willemsen, A, Sifaoui, I, Arberas-Jiménez, I, Schulz, F, Lorenzo-Morales, J & Horn, M 2024, 'A giant virus infecting the amoeboflagellate Naegleria', Nature Communications, vol. 15, no. 1, 3307. https://doi.org/10.1038/s41467-024-47308-2
Lee, U-J, Gwak, J-H, Choi, S, Jung, M-Y, Lee, TK, Ryu, H, Imisi Awala, S, Wanek, W, Wagner, M, Quan, Z-X & Rhee, S-K 2024, '"Ca. Nitrosocosmicus" members are the dominant archaea associated with plant rhizospheres', mSphere, vol. 9, no. 12, e0082124. https://doi.org/10.1128/msphere.00821-24
Schmider, T, Hestnes, AG, Brzykcy, J, Schmidt, H, Schintlmeister, A, Roller, BRK, Teran, EJ, Söllinger, A, Schmidt, O, Polz, MF, Richter, A, Svenning, MM & Tveit, AT 2024, 'Physiological basis for atmospheric methane oxidation and methanotrophic growth on air', Nature Communications, vol. 15, no. 1, 4151. https://doi.org/10.1038/s41467-024-48197-1
Gruseck, RJ, Palatinszky, M, Wagner, M, Hofmann, T & Zumstein, M 2024, 'Quantification of Guanidine in Environmental Samples using Benzoin Derivatization and LC-MS Analysis', MethodsX, vol. 13, 102972. https://doi.org/10.1016/j.mex.2024.102972
Imminger, S, Meier, DV, Schintlmeister, A, Legin, A, Schnecker, J, Richter, A, Gillor, O, Eichorst, SA & Woebken, D 2024, 'Survival and rapid resuscitation permit limited productivity in desert microbial communities', Nature Communications, vol. 15, no. 1, 3056. https://doi.org/10.1038/s41467-024-46920-6
Pereira, FC, Ge, X, Kristensen, JM, Kirkegaard, RH, Maritsch, K, Szamosvári, D, Imminger, S, Seki, D, Shazzad, JB, Zhu, Y, Decorte, M, Hausmann, B, Berry, D, Wasmund, K, Schintlmeister, A, Böttcher, T, Cheng, J-X & Wagner, M 2024, 'The Parkinson's disease drug entacapone disrupts gut microbiome homoeostasis via iron sequestration', Nature Microbiology, vol. 9, no. 12, pp. 3165–3183. https://doi.org/10.1038/s41564-024-01853-0
Bauchinger, F, Seki, FD & Berry, D 2024, 'Characteristics of putative keystones in the healthy adult human gut microbiota as determined by correlation network analysis', Frontiers in Microbiology, vol. 15, 1454634. https://doi.org/10.3389/fmicb.2024.1454634
Trojan, D, García-Robledo, E, Hausmann, B, Revsbech, NP, Woebken, D & Eichorst, SA 2024, 'A respiro-fermentative strategy to survive nanoxia in Acidobacterium capsulatum', FEMS microbiology ecology, vol. 100, no. 12, fiae152. https://doi.org/10.1093/femsec/fiae152