Publications

Bauchinger, F , Seki, FD & Berry, D 2024, 'Characteristics of putative keystones in the healthy adult human gut microbiota as determined by correlation network analysis', Frontiers in Microbiology, vol. 15. https://doi.org/10.3389/fmicb.2024.1454634

Lee, U-J, Gwak, J-H, Choi, S, Jung, M-Y, Lee, TK, Ryu, H, Imisi Awala, S, Wanek, W , Wagner, M, Quan, Z-X & Rhee, S-K 2024, '"Ca. Nitrosocosmicus" members are the dominant archaea associated with plant rhizospheres', mSphere. https://doi.org/10.1128/msphere.00821-24

Steensen, K , Séneca, J , Bartlau, N, Yu, XA, Hussain, FA & Polz, MF 2024, 'Tailless and filamentous prophages are predominant in marine Vibrio', The ISME Journal. https://doi.org/10.1093/ismejo/wrae202

Hodzic, A, Veinović, G, Alic, A, Seki, FD, Kunert, M, Nikolov, G, Sukara, R, Supic, J, Tomanović, S & Berry, D 2024, 'A metalloprotease secreted by an environmentally acquired gut bacterium hinders Borrelia afzelii colonization in Ixodes ricinus', Frontiers in Cellular and Infection Microbiology, vol. 14, 1476266. https://doi.org/10.3389/fcimb.2024.1476266

Wasmund, K, Singleton, C, Dahl Dueholm, MK, Wagner, M & Nielsen, PH 2024, 'The predicted secreted proteome of activated sludge microorganisms indicates distinct nutrient niches', mSystems, vol. 9, no. 10, e0030124. https://doi.org/10.1128/msystems.00301-24

Gruseck, RJ , Palatinszky, M , Wagner, M , Hofmann, T & Zumstein, M 2024, 'Quantification of Guanidine in Environmental Samples using Benzoin Derivatization and LC-MS Analysis', MethodsX, vol. 13, 102972. https://doi.org/10.1016/j.mex.2024.102972

Palatinszky, M, Herbold, CW, Sedlacek, CJ, Pühringer, D, Kitzinger, K , Giguere, AT, Wasmund, K, Nielsen, PH, Dueholm, MKD, Jehmlich, N, Gruseck, R , Legin, A, Kostan, J, Krasnici, N, Schreiner, C, Palmetzhofer, J , Hofmann, T , Zumstein, M , Djinović-Carugo, K , Daims, H & Wagner, M 2024, 'Growth of complete ammonia oxidizers on guanidine', Nature, vol. 633, pp. 646-653. https://doi.org/10.1038/s41586-024-07832-z

Bayer, B, Liu, S, Louie, K, Northen, TR, Wagner, M , Daims, H, Carlson, CA & Santoro, AE 2024, 'Metabolite release by nitrifiers facilitates metabolic interactions in the ocean', The ISME Journal, vol. 18, no. 1, wrae172. https://doi.org/10.1093/ismejo/wrae172

Crudo, F , Partsch, V , Del Favero, G, Petri, P, Braga, D, Danklmaier, A-C , Rollinger, JM, Varga, E, Berry, D & Marko, D 2024, 'Unlocking nature's arsenal: discovery of Alternaria mycotoxins as novel immunosuppressive and gut microbiota-targeting compounds', Toxicology Letters, vol. 399, no. Supplement 2, Meeting Abstract: P25-24, pp. S361-S362. https://doi.org/10.1016/j.toxlet.2024.07.860

Dietrich, M, Panhölzl, C, Angel, R, Giguere, AT , Randi, D, Hausmann, B, Herbold, CW, Pötsch, EM, Schaumberger, A, Eichorst, SA & Woebken, D 2024, 'Plant roots affect free-living diazotroph communities in temperate grassland soils despite decades of fertilization', Communications Biology, vol. 7, no. 1, 846. https://doi.org/10.1038/s42003-024-06522-w

Miettinen, TP, Gomez, A, Wu, Y, Wu, W, Usherwood, TR, Hwang, Y, Roller, BRK , Polz, MF & Manalis, SR 2024, 'Cell size, density, and nutrient dependency of unicellular algal gravitational sinking velocities', Science Advances, vol. 10, no. 27, adn8356. https://doi.org/10.1126/sciadv.adn8356

Hohagen, M, Sánchez, L , Herbst, AJ , Kählig, H, Shin, JW, Berry, D , Del Favero, G & Kleitz, F 2024, 'MANNosylation of Mesoporous Silica Nanoparticles Modifies TLR4 Localization and NF-κB Translocation in T24 Bladder Cancer Cells', Advanced Healthcare Materials, vol. 13, no. 17, 2304150. https://doi.org/10.1002/adhm.202304150

Deehan, EC, Zhang, Z, Nguyen, NK, Perez-Muñoz, ME, Cole, J, Riva, A, Berry, D, Prado, CM & Walter, J 2024, 'Adaptation to tolerate high doses of arabinoxylan is associated with fecal levels of Bifidobacterium longum', Gut microbes, vol. 16, no. 1, 2363021. https://doi.org/10.1080/19490976.2024.2363021

Oesterle, I, Ayeni, KI, Ezekiel, CN, Berry, D , Rompel, A & Warth, B 2024, 'Insights into the early-life chemical exposome of Nigerian infants and potential correlations with the developing gut microbiome', Environment International, vol. 188, 108766. https://doi.org/10.1016/j.envint.2024.108766

Sudo, M, Osvatic, J, Taylor, JD, Dufour, SC, Prathep, A, Wilkins, LGE, Rattei, T, Yuen, B & Petersen, JM 2024, 'SoxY gene family expansion underpins adaptation to diverse hosts and environments in symbiotic sulfide oxidizers', mSystems, vol. 9, no. 6, e01135-23. https://doi.org/10.1128/msystems.01135-23

Morel-Letelier, I, Yuen, B, Kück, AC, Camacho-García, YE, Petersen, JM, Lara, M, Leray, M, Eisen, JA, Osvatic, JT, Gros, O & Wilkins, LGE 2024, 'Adaptations to nitrogen availability drive ecological divergence of chemosynthetic symbionts', PLoS Genetics, vol. 20, no. 5, e1011295. https://doi.org/10.1371/journal.pgen.1011295

Awala, SI, Gwak, J-H, Kim, Y, Jung, M-Y, Dunfield, PF, Wagner, M & Rhee, S-K 2024, 'Nitrous oxide respiration in acidophilic methanotrophs', Nature Communications, vol. 15, no. 1, 4226. https://doi.org/10.1038/s41467-024-48161-z

Schmider, T, Hestnes, AG, Brzykcy, J, Schmidt, H , Schintlmeister, A , Roller, BRK, Teran, EJ, Söllinger, A, Schmidt, O, Polz, MF , Richter, A, Svenning, MM & Tveit, AT 2024, 'Physiological basis for atmospheric methane oxidation and methanotrophic growth on air', Nature Communications, vol. 15, no. 1, 4151. https://doi.org/10.1038/s41467-024-48197-1

Lee, KS, Landry, Z, Athar, A, Alcolombri, U, Pramoj Na Ayutthaya, P, Berry, D, de Bettignies, P, Cheng, J-X, Csucs, G, Cui, L, Deckert, V, Dieing, T, Dionne, J, Doskocil, O, D'Souza, G, García-Timermans, C, Gierlinger, N, Goda, K, Hatzenpichler, R, Henshaw, RJ, Huang, WE, Iermak, I, Ivleva, NP, Kneipp, J, Kubryk, P, Küsel, K, Lee, TK, Lee, SS, Ma, B, Martínez-Pérez, C, Matousek, P, Meckenstock, RU, Min, W, Mojzeš, P, Müller, O, Kumar, N, Nielsen, PH, Notingher, I, Palatinszky, M, Pereira, FC, Pezzotti, G, Pilat, Z, Plesinger, F, Popp, J, Probst, AJ, Riva, A, Saleh, AAE, Samek, O, Sapers, HM, Schubert, OT, Stubbusch, AKM, Tadesse, LF, Taylor, GT, Wagner, M, Wang, J, Yin, H, Yue, Y, Zenobi, R, Zini, J, Sarkans, U & Stocker, R 2024, 'MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data', Nature Microbiology, vol. 9, no. 5, pp. 1152-1156. https://doi.org/10.1038/s41564-024-01656-3

Foessleitner, P, Pjevac, P, Granser, S, Wisgrill, L, Pummer, L, Eckel, F, Seki, D, Berry, D, Hausmann, B & Farr, A 2024, 'The maternal microbiome in pregnancy, delivery, and early-stage development of neonatal microbiome after cesarean section: A prospective longitudinal study', Acta Obstetricia et Gynecologica Scandinavica, vol. 103, no. 5, pp. 832-841. https://doi.org/10.1111/aogs.14773