Publications

Krasenbrink J, Hanson BT, Weiss AS, Borusak S, Tanabe TS, Lang M et al. Sulfoquinovose is exclusively metabolized by the gut microbiota and degraded differently in mice and humans. Microbiome. 2025 Dec;13(1):184. doi: 10.1186/s40168-025-02175-x

Ye H, Šlipogor V, Hanson BT, Séneca J, Hausmann B, Herbold CW et al. Associations between gut microbiota and personality traits: insights from a captive common marmoset (

Callithrix jacchus) colony. Microbiology Spectrum. 2025 Nov 18;e0044325. Epub 2025 Nov 18. doi: 10.1128/spectrum.00443-25

Jancheva M, Nguyen THN, Anderl F, Joge S, Neubauer J, Rominger-Baumann C et al. A phage-selective trigger hints at an SOS-independent mechanism of prophage induction by oxidative stress. Chemical Science. 2025 Nov 11. Epub 2025 Nov 11. doi: 10.1039/d5sc04923g

Plöchl K, Böttcher T. A novel class of small-molecule inhibitors targeting bacteriophage infection. RSC Chemical Biology. 2025 Oct 27. Epub 2025 Oct 27. doi: 10.1039/d5cb00120j

Hodgskiss LH, Kerou M, Luo ZH, Bayer B, Maier A, Weckwerth W et al. Metabolic response of a chemolithoautotrophic archaeon to carbon limitation. mSystems. 2025 Oct 22;10(10):1-20. e0073225. doi: 10.1128/msystems.00732-25

Graichen LP, Linder MS, Keuter L, Jensen O, Doeller C, Lamm C et al. Entorhinal grid-like codes for visual space during memory formation. Nature Communications. 2025 Oct 20;16(1):9247. doi: 10.1038/s41467-025-64307-z

Data Reuse Consortium, Wagner M, Rattei T, Osvatic J, Speth D. A roadmap for equitable reuse of public microbiome data. Nature Microbiology. 2025 Sept 26;10(10):2384-2395. Epub 2025 Sept 26. doi: 10.1038/s41564-025-02116-2

Bayer B, Kitzinger K, Paul NL, Albers JB, Saito MA, Wagner M et al. Minor contribution of ammonia oxidizers to inorganic carbon fixation in the ocean. Nature Geoscience. 2025 Sept 23;18(11):1144-1151. doi: 10.1038/s41561-025-01798-x

Feng L, Loi JX, Séneca J, Pjevac P, Adnan FH, Ngoh GC et al. Nitrifying Communities in Biological Nitrogen Removal Processes at Tropical Municipal Wastewater Treatment Plants. Microbes and environments. 2025 Sept 10;40(3):ME25036. doi: 10.1264/jsme2.ME25036

Crudo F, Petri P, Pacchione M, Dall'Asta C, Birse N, Berry D et al. Alternaria mycotoxins and gut microbiota: antimicrobial properties and bacteria-dependent modulation of mycotoxin immunotoxicity. Toxicology Letters. 2025 Sept;411(Supplement: S). doi: 10.1016/j.toxlet.2025.07.160

Chen SC, Li XM, Battisti N, Guan G, Montoya MA, Osvatic J et al. Microbial iron oxide respiration coupled to sulfide oxidation. Nature. 2025 Aug 27;646(8086):925-933. doi: 10.1038/s41586-025-09467-0

Tocino-Márquez I, Zehl M, Séneca J, Pjevac P, Felkl M, Becker CFW et al. The bacterial community of the freshwater bryozoan Cristatella Mucedo and its secondary metabolites production potential. Scientific Reports. 2025 Aug 26;15(1):31456. doi: 10.1038/s41598-025-17084-0

Kondrotaite Z, Petersen J, Singleton C, Peces M, Petriglieri F, Jensen TBN et al. Ecophysiology and niche differentiation of three genera of polyphosphate-accumulating bacteria in a full-scale wastewater treatment plant. mSystems. 2025 Aug 15. doi: 10.1128/msystems.00322-25

Rasoulimehrabani H, Khadem S, Hodžić A, Philipp M, Gallo R, Nikolov G et al. Evaluating the prebiotic activity of arabinogalactan on the human gut microbiota using 16S rRNA gene sequencing and Raman-activated cell sorting. Microbiome Research Reports. 2025 Aug 14;4(3):30. doi: 10.20517/mrr.2025.29

Bale NJ, Fujimura H, Pjevac P, Koenen M, Ikeda H, Itagaki S et al. Unusual Plastoquinones in Non-Phototrophic Nitrifying Bacteria. Environmental Microbiology Reports. 2025 Aug 5;17(4):e70174. doi: 10.1111/1758-2229.70174

Kop LFM, Koch H, Speth D, Lüke C, Spieck E, Jetten MSM et al. Comparative genome analysis reveals broad phylogenetic and functional diversity within the order Nitrospirales. ISME Journal. 2025 Jul 22;19(1):wraf151. doi: 10.1093/ismejo/wraf151

Helmlinger L, Arthofer P, Cyran N, Collingro A, Horn M. The adaptation of chlamydiae to facultative host multicellularity. Current Biology. 2025 Jul 21;35(14):3368-3380.e4. doi: 10.1016/j.cub.2025.06.014

Rasoulimehrabani H, Riva A, Inan D, Hodžić A, Hausmann B, Nikolov G et al. Lactulose selectively stimulates members of the gut microbiota, as determined by multi-modal activity-based sorting. Gut microbes. 2025 Jun 27;17(1):2525482. doi: 10.1080/19490976.2025.2525482