Publications

Kyrpides, NC, Hugenholtz, P, Eisen, JA, Woyke, T, Goeker, M, Parker, CT, Amann, R, Beck, BJ, Chain, PSG, Chun, J, Colwell, RR, Danchin, A, Dawyndt, P, Dedeurwaerdere, T, DeLong, EF, Detter, JC, De Vos, P, Donohue, TJ, Dong, X-Z, Ehrlich, DS, Fraser, C, Gibbs, R, Gilbert, J, Gilna, P, Glockner, FO, Jansson, JK, Keasling, JD, Knight, R, Labeda, D, Lapidus, A, Lee, J-S, Li, W-J, Ma, J, Markowitz, V, Moore, ERB, Morrison, M, Meyer, F, Nelson, KE, Ohkuma, M, Ouzounis, CA, Pace, N, Parkhill, J, Qin, N, Rossello-Mora, R, Sikorski, J, Smith, D, Sogin, M, Stevens, R, Stingl, U, Suzuki, K, Taylor, D, Tiedje, JM, Tindall, B, Wagner, M, Weinstock, G, Weissenbach, J, White, O, Wang, J, Zhang, L, Zhou, Y-G, Field, D, Whitman, WB, Garrity, GM & Klenk, H-P 2014, 'Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains', PLoS Biology, vol. 12, no. 8, e1001920. https://doi.org/10.1371/journal.pbio.1001920

Lagkouvardos, I, Shen, J & Horn, M 2014, 'Improved axenization method reveals complexity of symbiotic associations between bacteria and acanthamoebae', Environmental Microbiology Reports, vol. 6, no. 4, pp. 383-388. https://doi.org/10.1111/1758-2229.12162

Schulz, F, Lagkouvardos, I, Wascher, F, Aistleitner, K, Kostanjsek, R & Horn, M 2014, 'Life in an unusual intracellular niche: a bacterial symbiont infecting the nucleus of amoebae', The ISME Journal: multidisciplinary journal of microbial ecology, vol. 8, no. 8, pp. 1634-1644. https://doi.org/10.1038/ismej.2014.5

Omsland, A, Sixt, BS, Horn, M & Hackstadt, T 2014, 'Chlamydial metabolism revisited: interspecies metabolic variability and developmental stage-specific physiologic activities', FEMS Microbiology Reviews, vol. 38, no. 4, pp. 779-801. https://doi.org/10.1111/1574-6976.12059

Jagtap, SS, Hehemann, J-H, Polz, MF, Lee, J-K & Zhao, H 2014, 'Comparative biochemical characterization of three exolytic oligoalginate lyases from Vibrio splendidus reveals complementary substrate scope, temperature, and pH adaptations', Applied and Environmental Microbiology, vol. 80, no. 14, pp. 4207-4214. https://doi.org/10.1128/AEM.01285-14

Remus-Emsermann, MNP, Lücker, S, Mueller, DB, Potthoff, E, Daims, H & Vorholt, JA 2014, 'Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization', Environmental Microbiology, vol. 16, no. 7, pp. 2329-2340. https://doi.org/10.1111/1462-2920.12482

Sorokin, DY, Vejmelkova, D, Lücker, S, Streshinskaya, GM, Rijpstra, WIC, Damste, JSS, Kleerbezem, R, van Loosdrecht, M, Muyzer, G & Daims, H 2014, 'Nitrolancea hollandica gen. nov., sp nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi', International Journal of Systematic and Evolutionary Microbiology, vol. 64, no. PART 6, 062232, pp. 1859-1865. https://doi.org/10.1099/ijs.0.062232-0

Berry, D & Widder, S 2014, 'Deciphering microbial interactions and detecting keystone species with co-occurrence networks', Frontiers in Microbiology, vol. 5, 219, pp. 219. https://doi.org/10.3389/fmicb.2014.00219

Burow, LC, Woebken, D, Marshall, IPG, Singer, SW, Pett-Ridge, J, Prufert-Bebout, L, Spormann, AM, Bebout, BM, Weber, PK & Hoehler, TM 2014, 'Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community', Geobiology, vol. 12, no. 3, pp. 221-230. https://doi.org/10.1111/gbi.12080

Shapiro, BJ & Polz, MF 2014, 'Ordering microbial diversity into ecologically and genetically cohesive units', Trends in Microbiology, vol. 22, no. 5, pp. 235-247. https://doi.org/10.1016/j.tim.2014.02.006

Yawata, Y, Cordero, OX, Menolascina, F, Hehemann, J-H, Polz, MF & Stocker, R 2014, 'Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations', Proceedings of the National Academy of Sciences of the United States of America, vol. 111, no. 15, pp. 5622-5627. https://doi.org/10.1073/pnas.1318943111

Majer, E, Salvador, Z, Zwart, MP, Willemsen, A, Elena, SF & Daròs, JA 2014, 'Relocation of the NIb gene in the tobacco etch potyvirus genome', Journal of Virology, vol. 88, no. 8, pp. 4586-4590. https://doi.org/10.1128/JVI.03336-13

Cordero, OX & Polz, MF 2014, 'Explaining microbial genomic diversity in light of evolutionary ecology', Nature Reviews. Microbiology, vol. 12, no. 4, pp. 263-273. https://doi.org/10.1038/nrmicro3218

Onesios-Barry, KM, Berry, D, Proescher, JB, Sivakumar, IKA & Bouwer, EJ 2014, 'Removal of Pharmaceuticals and Personal Care Products during Water Recycling: Microbial Community Structure and Effects of Substrate Concentration', Applied and Environmental Microbiology, vol. 80, no. 8, pp. 2440-2450. https://doi.org/10.1128/AEM.03693-13

Hofbauer, S, Gruber, C, Pirker, KF, Schaffner, I, Furtmueller, PG, Obinger, C, Hagmüller, A, Gysel, K, Mlynek, G, Kostan, J, Djinovic-Carugo, K, Bellei, M, Battistuzzi, G & Daims, H 2014, 'Understanding Chlorite Dismutase from Candidatus Nitrospira defluvii', Journal of Biological Inorganic Chemistry, vol. 19, pp. 253-253.

Lee, JZ, Burow, LC, Woebken, D, Everroad, RC, Kubo, MD, Spormann, AM, Weber, PK, Pett-Ridge, J, Bebout, BM & Hoehler, TM 2014, 'Fermentation couples Chloroflexi and sulfate-reducing bacteria to cyanobacteria in hypersaline microbial mats', Frontiers in Microbiology, vol. 5, 61. https://doi.org/10.3389/fmicb.2014.00061

Takemura, AF, Chien, DM & Polz, MF 2014, 'Associations and dynamics of Vibrionaceae in the environment, from the genus to the population level', Frontiers in Microbiology, vol. 5, 38. https://doi.org/10.3389/fmicb.2014.00038

Toenshoff, ER, Szabó, G, Gruber, D & Horn, M 2014, 'The pine bark adelgid Pineus strobi contains two novel bacteriocyte-associated gammaproteobacterial symbionts', Applied and Environmental Microbiology, vol. 80, no. 3, pp. 878-885. https://doi.org/10.1128/AEM.03310-13

Almstrand, R, Persson, F, Daims, H, Ekenberg, M, Christensson, M, Wilen, B-M, Sorensson, F & Hermansson, M 2014, 'Three-Dimensional Stratification of Bacterial Biofilm Populations in a Moving Bed Biofilm Reactor for Nitritation-Anammox', International Journal of Molecular Sciences, vol. 15, no. 2, pp. 2191-2206. https://doi.org/10.3390/ijms15022191

Hofbauer, S, Gysel, K, Bellei, M, Hagmüller, A, Schaffner, I, Mlynek, G, Kostan, J, Pirker, KF, Daims, H, Furtmueller, PG, Battistuzzi, G, Djinovic-Carugo, K & Obinger, C 2014, 'Manipulating Conserved Heme Cavity Residues of Chlorite Dismutase: Effect on Structure, Redox Chemistry, and Reactivity', Biochemistry, vol. 53, no. 1, pp. 77-89. https://doi.org/10.1021/bi401042z