Publications

Petersen, J & Dubilier, N 2014, 'Viruses: Gene swapping in the dead zone', eLife, vol. 3, e04600. https://doi.org/10.7554/eLife.04600

Seedorf, H, Griffin, NW, Ridaura, VK, Reyes, A, Cheng, J, Rey, FE, Smith, MI, Simon, GM, Scheffrahn, RH, Woebken, D, Spormann, AM, Van Treuren, W, Ursell, LK, Pirrung, M, Robbins-Pianka, A, Cantarel, BL, Lombard, V, Henrissat, B, Knight, R & Gordon, JI 2014, 'Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut', Cell, vol. 159, no. 2, pp. 253-266. https://doi.org/10.1016/j.cell.2014.09.008

Pester, M, Maixner, F, Berry, D , Rattei, T, Koch, H, Lücker, S, Nowka, B, Richter, A, Spieck, E, Lebedeva, E, Loy, A , Wagner, M & Daims, H 2014, 'NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira', Environmental Microbiology, vol. 16, no. 10, pp. 3055-3071. https://doi.org/10.1111/1462-2920.12300

Rauch, I, Hainzl, E, Rosebrock, F, Heider, S, Schwab, C, Berry, D, Stoiber, D, Wagner, M , Schleper, C , Loy, A, Urich, T, Müller, M, Strobl, B, Kenner, L & Decker, T 2014, 'Type I interferons have opposing effects during the emergence and recovery phases of colitis', European Journal of Immunology, vol. 44, no. 9, pp. 2749-2760. https://doi.org/10.1002/eji.201344401

Jan, C, Petersen, JM, Werner, J, Teeling, H, Huang, S, Gloeckner, FO, Golyshina, OV, Dubilier, N, Golyshin, PN, Jebbar, M & Cambon-Bonavita, M-A 2014, 'The gill chamber epibiosis of deep-sea shrimp Rimicaris exoculata: an in-depth metagenomic investigation and discovery of Zetaproteobacteria', Environmental Microbiology, vol. 16, no. 9, pp. 2723-2738. https://doi.org/10.1111/1462-2920.12406

Koch, H, Galushko, A, Albertsen, M, Schintlmeister, A, Gruber-Dorninger, C, Lücker, S, Pelletier, E, Le Paslier, D, Spieck, E, Richter, A, Nielsen, PH, Wagner, M & Daims, H 2014, 'Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation', Science, vol. 345, no. 6200, pp. 1052-1054. https://doi.org/10.1126/science.1256985

Daniel, H, Gholami, AM, Berry, D, Desmarchelier, C, Hahne, H, Loh, G, Mondot, S, Lepage, P, Rothballer, M, Walker, A, Böhm, C, Wenning, M, Wagner, M, Blaut, M, Schmitt-Kopplin, P, Kuster, B, Haller, D & Clavel, T 2014, 'High-fat diet alters gut microbiota physiology in mice', The ISME Journal: multidisciplinary journal of microbial ecology. https://doi.org/10.1038/ismej.2013.155

Kyrpides, NC, Hugenholtz, P, Eisen, JA, Woyke, T, Goeker, M, Parker, CT, Amann, R, Beck, BJ, Chain, PSG, Chun, J, Colwell, RR, Danchin, A, Dawyndt, P, Dedeurwaerdere, T, DeLong, EF, Detter, JC, De Vos, P, Donohue, TJ, Dong, X-Z, Ehrlich, DS, Fraser, C, Gibbs, R, Gilbert, J, Gilna, P, Glockner, FO, Jansson, JK, Keasling, JD, Knight, R, Labeda, D, Lapidus, A, Lee, J-S, Li, W-J, Ma, J, Markowitz, V, Moore, ERB, Morrison, M, Meyer, F, Nelson, KE, Ohkuma, M, Ouzounis, CA, Pace, N, Parkhill, J, Qin, N, Rossello-Mora, R, Sikorski, J, Smith, D, Sogin, M, Stevens, R, Stingl, U, Suzuki, K, Taylor, D, Tiedje, JM, Tindall, B, Wagner, M, Weinstock, G, Weissenbach, J, White, O, Wang, J, Zhang, L, Zhou, Y-G, Field, D, Whitman, WB, Garrity, GM & Klenk, H-P 2014, 'Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains', PLoS Biology, vol. 12, no. 8, e1001920. https://doi.org/10.1371/journal.pbio.1001920

Lagkouvardos, I, Shen, J & Horn, M 2014, 'Improved axenization method reveals complexity of symbiotic associations between bacteria and acanthamoebae', Environmental Microbiology Reports, vol. 6, no. 4, pp. 383-388. https://doi.org/10.1111/1758-2229.12162

Schulz, F, Lagkouvardos, I, Wascher, F, Aistleitner, K, Kostanjsek, R & Horn, M 2014, 'Life in an unusual intracellular niche: a bacterial symbiont infecting the nucleus of amoebae', The ISME Journal: multidisciplinary journal of microbial ecology, vol. 8, no. 8, pp. 1634-1644. https://doi.org/10.1038/ismej.2014.5

Omsland, A, Sixt, BS, Horn, M & Hackstadt, T 2014, 'Chlamydial metabolism revisited: interspecies metabolic variability and developmental stage-specific physiologic activities', FEMS Microbiology Reviews, vol. 38, no. 4, pp. 779-801. https://doi.org/10.1111/1574-6976.12059

Remus-Emsermann, MNP, Lücker, S, Mueller, DB, Potthoff, E, Daims, H & Vorholt, JA 2014, 'Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization', Environmental Microbiology, vol. 16, no. 7, pp. 2329-2340. https://doi.org/10.1111/1462-2920.12482

Sorokin, DY, Vejmelkova, D, Lücker, S, Streshinskaya, GM, Rijpstra, WIC, Damste, JSS, Kleerbezem, R, van Loosdrecht, M, Muyzer, G & Daims, H 2014, 'Nitrolancea hollandica gen. nov., sp nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi', International Journal of Systematic and Evolutionary Microbiology, vol. 64, no. PART 6, 062232, pp. 1859-1865. https://doi.org/10.1099/ijs.0.062232-0

Berry, D & Widder, S 2014, 'Deciphering microbial interactions and detecting keystone species with co-occurrence networks', Frontiers in Microbiology, vol. 5, 219, pp. 219. https://doi.org/10.3389/fmicb.2014.00219

Burow, LC, Woebken, D, Marshall, IPG, Singer, SW, Pett-Ridge, J, Prufert-Bebout, L, Spormann, AM, Bebout, BM, Weber, PK & Hoehler, TM 2014, 'Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community', Geobiology, vol. 12, no. 3, pp. 221-230. https://doi.org/10.1111/gbi.12080

Majer, E, Salvador, Z, Zwart, MP, Willemsen, A, Elena, SF & Daròs, JA 2014, 'Relocation of the NIb gene in the tobacco etch potyvirus genome', Journal of Virology, vol. 88, no. 8, pp. 4586-4590. https://doi.org/10.1128/JVI.03336-13

Onesios-Barry, KM, Berry, D, Proescher, JB, Sivakumar, IKA & Bouwer, EJ 2014, 'Removal of Pharmaceuticals and Personal Care Products during Water Recycling: Microbial Community Structure and Effects of Substrate Concentration', Applied and Environmental Microbiology, vol. 80, no. 8, pp. 2440-2450. https://doi.org/10.1128/AEM.03693-13

Hofbauer, S, Gruber, C, Pirker, KF, Schaffner, I, Furtmueller, PG, Obinger, C, Hagmüller, A, Gysel, K, Mlynek, G, Kostan, J, Djinovic-Carugo, K, Bellei, M, Battistuzzi, G & Daims, H 2014, 'Understanding Chlorite Dismutase from Candidatus Nitrospira defluvii', Journal of Biological Inorganic Chemistry, vol. 19, pp. 253-253.

Lee, JZ, Burow, LC, Woebken, D, Everroad, RC, Kubo, MD, Spormann, AM, Weber, PK, Pett-Ridge, J, Bebout, BM & Hoehler, TM 2014, 'Fermentation couples Chloroflexi and sulfate-reducing bacteria to cyanobacteria in hypersaline microbial mats', Frontiers in Microbiology, vol. 5, 61. https://doi.org/10.3389/fmicb.2014.00061

Toenshoff, ER, Szabó, G, Gruber, D & Horn, M 2014, 'The pine bark adelgid Pineus strobi contains two novel bacteriocyte-associated gammaproteobacterial symbionts', Applied and Environmental Microbiology, vol. 80, no. 3, pp. 878-885. https://doi.org/10.1128/AEM.03310-13