Univ.-Prof. Dr. Holger Daims

 

 

 

 

 

Deputy Head of the Department of Microbiology and Ecosystem Science
Deputy Head of the Division of Microbial Ecology

☎ +43 1 4277 91204

✉ holger.daims@univie.ac.at

Our research focuses on microorganisms driving the biogeochemical nitrogen cycle, with particular emphasis on key players in the nitrification process: nitrite-oxidizing bacteria (NOB) and complete ammonia oxidizers (comammox). Employing various molecular, 'omics', and microbial physiology techniques, we identify new nitrifying microbes and investigate the metabolism, ecophysiology, and evolution of these elusive organisms. Our objective is to gain a fundamental biological understanding of nitrification in natural and engineered ecosystems, which could also improve management practices in agriculture and wastewater treatment, and mitigate greenhouse gas (nitrous oxide) emissions.

Another area of interest are microbe-microbe interactions within complex microbiomes, such as biofilms in engineered and natural environments. Integrating 'omics', fluorescence and chemical imaging, and computational approaches, we pinpoint microbial partners and uncover their in situ interactions. Our aim is to reveal core principles of microbial interactions that govern the composition, spatial structuring, and functional adaptability of microbial communities.

Research Topics

Join the Team

If you are interested in joining our team, explore our open positions and learn more about available PhD and postdoc stipends here.

Teaching

To view Holger Daims' teaching activities at the University of Vienna, visit u:find.

Group Members

 Publications

Showing entries 19 - 24 out of 118
Lukumbuzya, M., Kristensen, J. M., Kitzinger, K., Pommerening-Röser, A., Nielsen, P. H., Wagner, M., Daims, H., & Pjevac, P. (2020). A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria. Water Research, 186, [116372]. https://doi.org/10.1016/j.watres.2020.116372
Yang, Y., Daims, H., Liu, Y., Herbold, C. W., Pjevac, P., Lin, J-G., Li, M., & Gu, J-D. (2020). Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems. mBio, 11(2), [e03175-19]. https://doi.org/10.1128/mBio.03175-19
Kitzinger, K., Marchant, H. K., Bristow, L. A., Herbold, C. W., Padilla, C. C., Kidane, A. T., Littmann, S., Daims, H., Pjevac, P., Stewart, F. J., Wagner, M., & Kuypers, M. M. M. (2020). Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean. Nature Communications, 11(1), [767]. https://doi.org/10.1038/s41467-020-14542-3
Sedlacek, C., Giguere, A., Dobie, M. D., Mellbye, B. L., Ferrell, R. V., Wöbken, D., Sayavedra-Soto, L. A., Bottomley, P. J., Daims, H., Wagner, M., & Pjevac, P. (2020). Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth. mSystems, 5(1), [e00562-19]. https://doi.org/10.1128/mSystems.00562-19
Riva, A., Kuzyk, O., Forsberg, E., Siuzdak, G., Pfann, C., Herbold, C., Daims, H., Loy, A., Warth, B., & Berry, D. (2019). A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome. Nature Communications, 10(1), [4366]. https://doi.org/10.1038/s41467-019-12413-0
Lukumbuzya, M., Schmid, M., Pjevac, P., & Daims, H. (2019). A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms. Frontiers in Microbiology, 10, [1383]. https://doi.org/10.3389/fmicb.2019.01383