DOME

Division of Microbial Ecology (DOME)

Centre for Microbiology and Environmental Systems Science

About DOME

The Division of Microbial Ecology | DOME at the Centre for Microbiology and Environmental Systems Science | CeMESS is a team of microbiologists and molecular biologists. Our mission is to unravel the complexities of microbial life and its profound impact on our health and environment.

Our researchers explore the evolution, ecophysiology, interactions and functions of microbes across a broad range of systems. We apply cutting-edge methods, from 'omics analysis, to single-cell isotope probing, to microbial imaging, to computational community modelling.

More about CeMESS

News

Congratulations Dr. Kop!

04.07.2025 DOME

Linnea Kop successfully defended her PhD thesis entitled "From (Meta)Genomes to Ecosystems: Unraveling the Ecophysiology and Phylogenetic Diversity of…

Congratulations to Megan Sørensen on receiving an FWF-ASTRA Award!

01.07.2025 DOME

We’re thrilled to announce that Megan Sørensen has been awarded a prestigious FWF-ASTRA grant to investigate at CeMESS how microbial partnerships have…

New Study: Salinization at Lake Vrana

30.06.2025 DOME

Beneath the scenic surface of Croatia's Lake Vrana, researchers have uncovered evidence of climate change's impact. A new study co-led by CeMESS…

ERC Advanced Grant awarded to Dagmar Woebken

17.06.2025 DOME

CeMESS Assoc Prof. Dagmar Woebken has secured a highly competitive ERC Advanced Grant for her project 'Windows of microbial activity in deserts…

“Let’s Talk About Symbiosis” goes Kahlenberg

13.06.2025 DOME

Our seminar series “Let’s Talk About Symbiosis” made a brilliant comeback by teaming up with the closing event of the FWF doc.funds project MAINTAIN.…

Katharina Kitzinger Appointed Assistant Professor

10.06.2025 DOME

CeMESS is excited to announce the appointment of Katharina Kitzinger as a new Assistant Professor (Tenure Track). Her research focuses on linking the…

Events

DOME Lecture: Gut microbiota mediate phytoestrogen-associated infertility in the white rhinoceros

18.01.2022 DOME Lecture Series

Candace Williams

Sequence Matching in the Context of Extremely Large Sequence Collections

11.11.2021 DOME Lecture Series

Julian Regalado Perez

Protists and plants: community assembly, "microbiomes" and diversity of microbial eukaryotes in rhizosphere and phyllosphere

06.05.2021 DOME Lecture Series

Michael Bonkowski

Latest Publications at DOME

Kralova S, Spacek P, Gafriller J, Bezdicek M, Medvedcova V, Séneca J et al. Kineochelins-A New Group of Siderophores From an Antarctic Bacterium. Microbial Biotechnology. 2026 Jun;19(6):1-24. e70386. doi: 10.1111/1751-7915.70386

Abergel C, Abrahão JS, Coulibaly F, Fischer M, Jeudy S, Knorr RL et al. Infection cycles of viruses of the phylum Nucleocytoviricota. Nature Reviews. Microbiology. 2026 May 29. Epub 2026 May 29. doi: 10.1038/s41579-026-01319-6

Hodžić A, Kunert M, Juračić M, Veinović G, Sukara R, Tomanović S et al. Immune-mediated microbial interference governs Borrelia colonization of the tick gut. iScience. 2026 May 15;29(5):115628. doi: 10.1016/j.isci.2026.115628

Treichel NS, Pauvert C, Séneca J , Pjevac P , Berry D, Penders J et al. Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis. Nature Microbiology. 2026 May;11(5):1233-1244. Epub 2026 Apr 21. doi: 10.1038/s41564-026-02334-2

Iriarte-Mesa C, Juère E, Bileck A, Kremsmayr T, Goodson ML, Ehrlich A et al. Mesoporous Silica Nanoparticles-Based Formulations for Enhanced Oral Delivery of Peptide Drugs: A Case Study on Insulin. Small. 2026 Apr 27;22(24):e13347. doi: 10.1002/smll.202513347